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  • Originally posted by reg1965 View Post
    Through all of my research into DNA technology I have never come across a phenomenon whereby contaminate DNA masks other DNA; a mixed profile is what you would get.
    That would be where the DNA from one component is in such a high concentration compared to the other that the lesser component falls below your wonderful arbitary RFU threshold.

    Were did the judges get this from to formulate the quoted scenario.
    Simple, they don't, they reply on the experts to give their expert opinion.

    I don't give a badgers chuff for the opinions of 3 ignorant appeal court judges when the science in this case is plainly lacking credibility in the wider world.
    It's a good job that the science used in this case has got international recognition then.

    The whole appeal was nothing more than a whitewash.
    How? Why? For what purpose? What was the motive behind this?

    Do you believe that Ronald Castree is guilty of the murder of Leslie Moleseed? He was convicted on the DNA evidence.

    KR,
    Vic.
    Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
    Unseen Academicals - Terry Pratchett.

    Comment


    • I, along with JamesDean, DM and Sara have posted enough material on LCN DNA here for anyone who is willing to read them to form an opinion of concern over LCN's use in the criminal justice system.
      If I find anything else of interest to post then I will and if someone new posts I will reply but until then there seems very little I can personally add.
      reg

      Comment


      • Originally posted by reg1965 View Post
        I, along with JamesDean, DM and Sara have posted enough material on LCN DNA here for anyone who is willing to read them to form an opinion of concern over LCN's use in the criminal justice system.
        If I find anything else of interest to post then I will and if someone new posts I will reply but until then there seems very little I can personally add.
        reg
        How very arrogant, speaking for 3 other people without their consent or any suggestion that they agree with what you've said.

        In other words, you're giving up because your argument isn't strong enough to persuade me.

        At least admit it, instead of giving superfluous reasons for not answering the many difficult questions that would undermine your argument.

        KR,
        Vic.
        Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
        Unseen Academicals - Terry Pratchett.

        Comment


        • Hi Folks,

          I readily admit that I’m no scientist, but I can interpret the written word well enough to know when someone else is misinterpreting it. This could be because their language skills are not up to their scientific ones, but if it’s a case of trying to blind me with the science it won’t work.

          ROGER MANN: We only have one profile. That profile matches James Hanratty. If that was a contaminant, if that was due to contamination we would expect two profiles, one from James Hanratty due to the contamination and one from the original killer.

          As Vic has demonstrated, what is meant here is that they only have one profile that could be attributed to the guilty party. The profiles attributed to the two victims are irrelevant in the context of an observation that two ‘foreign’ profiles would be expected if Hanratty’s got on the knickers innocently, after the rapist had left his own guilty deposit there.

          Originally posted by reg1965 View Post

          Through all of my research into DNA technology I have never come across a phenomenon whereby contaminate DNA masks other DNA; a mixed profile is what you would get.
          Hi Reg,

          With respect, isn’t this precisely why it was considered way beyond unlikely that Hanratty’s DNA got on the knickers innocently? Look again at the wording of the quote supplied by Vic:

          For that not to be the case we would have to suppose that the DNA of the rapist, also of blood group O, had either degraded so as to become undetectable or had been masked by James Hanratty's DNA during the course of a contaminating event.

          In other words, a scenario whereby Hanratty’s DNA could have contaminated the knickers and somehow masked the rapist’s DNA (and survived, alongside the DNA attributed to both victims, to provide a profile that matched - with no discrepancies - the one obtained from the hanky and identified as Hanratty’s) was simply not considered a viable option.

          Nor was it considered reasonable to theorise that the rapist’s DNA had degraded beyond detection, while DNA of a similar age from three innocent parties had not. The only scenario left is the one where the offender’s semen was not even present on the fragment cut from the garment and retained.

          If you want to suggest there were discrepancies, or that only a mixed profile could have been obtained from the knicker fragment (and the hanky too?) and the three individual profiles - no more, no less - could only have been arrived at and matched/identified using guesswork, would you put it down to incompetence or breathtaking dishonesty? And why did nobody at the time have sufficient expertise to wave a red flag over such clear, unequivocal findings if they were simply too good to be true?

          Love,

          Caz
          X
          Last edited by caz; 01-30-2009, 02:44 PM.
          "Comedy is simply a funny way of being serious." Peter Ustinov


          Comment


          • Hi again all,

            Reg, could I ask you what you think got screwed up here?

            Do you think Hanratty's DNA was on the knicker fragment, was correctly identified, but got there innocently?

            Do you think the rapist's DNA was ever there? If so, was it misidentified, undetectable or just missed?

            Or do you think the fragment was rapist-free and Hanratty-free and the DNA recovered from it simply not attributed correctly, either to the right individuals or the right number of individuals?

            I'm still trying to ascertain what, if anything, you were expecting the DNA analysis to show, and what findings, if any, you would have accepted.

            Love,

            Caz
            X
            "Comedy is simply a funny way of being serious." Peter Ustinov


            Comment


            • Originally posted by caz View Post
              I readily admit that I’m no scientist, but I can interpret the written word well enough to know when someone else is misinterpreting it. This could be because their language skills are not up to their scientific ones, but if it’s a case of trying to blind me with the science it won’t work.
              Hi Caz,

              From para 126 of the judgment:-
              The only DNA extracted from the handkerchief came from James Hanratty. The only places on the handkerchief from which his DNA was extracted were the areas of mucus staining.
              From the above quote how many times do you think the hanky was sampled and DNA tested?

              My bet is "at least 2", but I wonder if we can conclude it's any more than that.

              KR,
              Vic.

              edit: I supposed the same reasoning would have to apply to:-
              With regard to the knicker fragment we have what Dr Whitaker would describe as a typical distribution of male and female DNA following an act of sexual intercourse leading, to the obvious inference that the male contribution came from James Hanratty.
              Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
              Unseen Academicals - Terry Pratchett.

              Comment


              • Hi Vic,

                Yes, 'places' and 'the areas' would imply at least two DNA extractions from the hanky, both of which were found to match DNA taken from Hanratty's dead body.

                But it would have been misleading to imply that there was no non-Hanratty DNA to be extracted from anywhere on the hanky, or the Hanratty DNA was confined to 'the' areas of mucus staining, if they hadn't tested the non-mucus-stained areas and all the mucus-stained ones. Obviously more than one person could in theory have blown their nose on that hanky, and any number, in theory, could have handled it and left traces at some point, even if only Hanratty's mucus actually survived to tell the tale.

                It would also be extremely misleading to describe any finding as a 'typical' distribution if it was based on guesswork and assumption, and not what had 'typically' been observed whenever it was known that sex had indeed taken place between the two parties whose DNA showed up.

                Love,

                Caz
                X
                "Comedy is simply a funny way of being serious." Peter Ustinov


                Comment


                • Hi caz

                  Interesting ?'s but not mutually exclusive as I will show.

                  Using SGM+ or other such validated technique, a suspect can be excluded. Using LCN no such exculporary means are possible. The original amount of template used for LCN testing is below the stochastic thresholds of SGM+. Therefore allelic drop in and out is never reproducable from one replicate to another. Interpretation becomes arbitrary even if two analysts are working on the same sample.

                  Originally posted by caz View Post
                  Do you think Hanratty's DNA was on the knicker fragment, was correctly identified, but got there innocently?
                  I don't know.

                  Contamination could not be ruled out by the respondents.

                  Originally posted by caz View Post
                  Do you think the rapist's DNA was ever there? If so, was it misidentified, undetectable or just missed?
                  Again, I don't know.

                  Certainly LCN would have been of little help here as a mixed profile would have been produced. See articles on LCN for the problems associated with it.

                  Originally posted by caz View Post
                  Or do you think the fragment was rapist-free and Hanratty-free and the DNA recovered from it simply not attributed correctly, either to the right individuals or the right number of individuals?
                  Sorry to sound boring but again I don't know.

                  See stuff on mixed profiles that have been posted here.

                  Originally posted by caz View Post
                  I'm still trying to ascertain what, if anything, you were expecting the DNA analysis to show, and what findings, if any, you would have accepted.
                  The only DNA evidence I would accept is that carried out using SGM+, or an equivalent, following the correct guidelines for that system. For these systems produce reliable replicate samples.

                  Reg

                  Comment


                  • Originally posted by caz View Post
                    Yes, 'places' and 'the areas' would imply at least two DNA extractions from the hanky, both of which were found to match DNA taken from Hanratty's dead body.
                    Hi Caz,

                    Surely there must be (at least one) sample taken from the non-mucous areas, because of the "only places". And those sample(s) must have shown no DNA at all.

                    KR,
                    Vic.
                    Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
                    Unseen Academicals - Terry Pratchett.

                    Comment


                    • Originally posted by reg1965 View Post
                      Contamination could not be ruled out by the respondents.
                      Hi Reg,

                      The above is wrong. The possibility of contamination could not be ruled out.

                      There are 3 possible alternatives (the 4th being impossibile)

                      1. Contamination: Possible but didn't occur.
                      2. Contamination: Possible and did occur.
                      3. Contamination: Impossible and didn't occur.

                      The 4th being contamination is impossible but did occur - which is the situation that couldn't happen.

                      You seem to repeatedly confuse the first two situations. All the experts rule out situation 3 above, whereas you are saying that they ruled out both situation 3 and situation 1, which is just not true.

                      Either that or you are denying that situation 1 above could occur. The experts are all saying that what happened was situation 1 - contamination could have occured but random chance means it didn't occur.

                      KR,
                      Vic.
                      Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
                      Unseen Academicals - Terry Pratchett.

                      Comment


                      • Hi Vic

                        Originally posted by Victor View Post
                        The above is wrong. The possibility of contamination could not be ruled out.
                        You will have to explain the difference between the "possibility of contamination could not be ruled out" and "contamination could not be ruled out".

                        I will go one further and say that the use of the word possibility indicates that the respondents do not know for sure if contamination existed or not in their tests!

                        Regards
                        Reg

                        Comment


                        • Originally posted by Victor View Post
                          Hi Caz,

                          Surely there must be (at least one) sample taken from the non-mucous areas, because of the "only places". And those sample(s) must have shown no DNA at all.

                          KR,
                          Vic.
                          Hi Vic,

                          Well that’s what I’m sure is implied, but the language is slightly ambiguous:

                          The only DNA extracted from the handkerchief came from James Hanratty. The only places on the handkerchief from which his DNA was extracted were the areas of mucus staining.

                          Someone who sees manipulation and skulduggery everywhere could infer from this that the only places they took samples from were ‘the areas’ of mucus staining, in which case they would only have tried to extract DNA from those areas, and might have missed some extractable DNA in the non-mucous areas. I don’t for a moment believe this is what is meant here, but it could have been worded a bit more tightly for the layman, to allow no wriggle room, eg:

                          The only DNA extracted came from James Hanratty, and only from the areas of mucus staining. No DNA was detected anywhere else on the handkerchief.

                          That would more clearly imply attempts to detect/extract DNA from all areas that bore no fruit.

                          Hi Reg,

                          With respect, it’s a bit of a cop-out in general (and a misrepresentation in this case) to claim that contamination could not be ruled out. As Vic has explained it’s the potential for contamination that can rarely if ever be ruled out entirely, no matter what case you fancied getting your teeth into - not the actuality, which was as good as ruled out in Hanratty’s case by the very clear findings in combination with all the known circumstances.

                          The contamination issue becomes meaningless if nobody could safely be convicted (or cleared of all suspicion for that matter) with the help of DNA testing as long as there had been a potential for contamination, regardless of whether any could be found, indicated or even reasonably suspected. It has to come down to what is seen as overwhelmingly likely or unlikely to have led to the results in each case.

                          If the Hanratty results had been any vaguer than they were, or ambiguous or inconclusive, or had produced an uneasy mix of unidentifiable or unsourced DNA profiles along with any identifiable ones from expected sources, then fine - the spectre of contamination virtually introduces itself and shakes hands with all interested parties.

                          But at some point you have to demonstrate how a theoretical contamination event could have become the reality and contributed to the very specific findings in this case, when others saw it as implausible to the point of conceding a long, sincerely fought, but ultimately uneven struggle. Hanratty - and only Hanratty - was found crawling all over the hanky and knickers, for all the world like he stamped his ownership on them on that dreadful night back in 1961. And not a trace of the man whose claims to that ownership you so wanted to believe.

                          Originally posted by reg1965 View Post

                          The only DNA evidence I would accept is that carried out using SGM+, or an equivalent, following the correct guidelines for that system. For these systems produce reliable replicate samples.
                          So once again, what was your attitude to the proposed DNA testing before it happened, and what were your expectations? Can you say hand on heart that you would have beaten the same DNA drums had Alphon put his stamp in the right places and Hanratty not shown up at all? Would you have embraced an easy but futile argument that the potential for contamination can never really be ruled out?

                          Love,

                          Caz
                          X
                          Last edited by caz; 02-03-2009, 08:00 PM.
                          "Comedy is simply a funny way of being serious." Peter Ustinov


                          Comment


                          • Originally posted by caz View Post
                            So once again, what was your attitude to the proposed DNA testing before it happened, and what were your expectations? Can you say hand on heart that you would have beaten the same DNA drums had Alphon put his stamp in the right places and Hanratty not shown up at all? Would you have embraced an easy but futile argument that the potential for contamination can never really be ruled out?
                            Hi Caz
                            My attitude was one of DNA should be correct and my expectation was that the DNA tests would show that no DNA from Hanratty would be found because I believed and still do that Hanratty had nothing to do with the A6 murder whatsoever.
                            As far as Alphon is concerned, he was at that time and still is alive. The DNA would have been put to him and he may or may not have confessed. It would then be up to the CPS to see if a convincing case could be brought before a jury.
                            For your further interest I was totally and utterly unaware of the existence of LCN DNA until what has happened in the last year. With the Templeton Woods case and especially Hoey (Omagh Bombing appeal), LCN has been shown to be riddled with crippling problems that make it pretty worthless as anything other than an itelligence tool. All but 2 other countries wouldn't touch LCN with a barge pole for lead evidence in criminal investigations.
                            Have you read any of the articles about LCN linked to on here? If not I would suggest having a look. Most are nicely layman targeted so should not pose any problems in understanding

                            Regards
                            Reg

                            Comment


                            • Originally posted by reg1965 View Post
                              You will have to explain the difference between the "possibility of contamination could not be ruled out" and "contamination could not be ruled out".
                              Hi Reg,
                              That's what I attempted to do in the last post.
                              contamination is a statistical probability event - one of your links states that in the worst case examined the probability is 70%
                              "contamination could not be ruled out" - could imply that "contamination definitely occurred"
                              "the possibility of contamination could not be ruled out" - means that the probability applies - some will be contaminated, some won't.

                              I will go one further and say that the use of the word possibility indicates that the respondents do not know for sure if contamination existed or not in their tests!
                              That's perverting an obvious probability prediction. Every experiment is susceptible to contamination, and scientists do everything to eliminate or quantify it - hence the "Good Practice" guidelines, advice on how to minimise the possibility of contamination, but sometimes you can't guarantee to eliminate it.

                              In other words - Scientists do not know for sure if their experiments will be contaminated, only by examining the results can they say whether it occurred or not (or sometimes "may have occurred").

                              The use of the word possibility (prior to discussing the results) indicates that contamination is probabilistic - it cannot be guaranteed to occur nor to not occur. The words "But that is to ignore the results of the DNA profiling" indicates that they were discussing their expectations - they expected to possibly find extra contamination profiles, but in actuality found none.

                              KR,
                              Vic.
                              Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
                              Unseen Academicals - Terry Pratchett.

                              Comment


                              • Originally posted by reg1965 View Post
                                All but 2 other countries wouldn't touch LCN with a barge pole for lead evidence in criminal investigations.
                                Hi Reg,

                                Have you got a reference for the above quote?

                                LCN is a developing forensic tool, and as far as I am aware every investigative organisation is interested in how it is developing, with the hope of eventually getting a tool as robust as SGM+. Obviously that can't happen unless it is used and evaluated.

                                Have you got any information on how long it took for SGM+ to gain the approval it has now?
                                How does that timescale compare for LCN?
                                What about fingerprinting and other forensic tools?

                                Do you think LCN will ever provide useful results? Or should it just be abandoned now?

                                KR,
                                Vic.
                                Truth is female, since truth is beauty rather than handsomeness; this [...] would certainly explain the saying that a lie could run around the world before Truth has got its, correction, her boots on, since she would have to chose which pair - the idea that any woman in a position to choose would have just one pair of boots being beyond rational belief.
                                Unseen Academicals - Terry Pratchett.

                                Comment

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